Package: GENEAcore 1.2.0

GENEAcore: Pre-Processing of 'GENEActiv' Data

Analytics to read in and segment raw 'GENEActiv' accelerometer data into epochs and events. For more details on the 'GENEActiv' device, see <https://activinsights.com/resources/geneactiv-support-1-2/>.

Authors:Joss Langford [aut], Ian Long [aut], Jia Ying Chua [aut, cre], Activinsights Ltd [cph]

GENEAcore_1.2.0.tar.gz
GENEAcore_1.2.0.zip(r-4.7-any)GENEAcore_1.2.0.zip(r-4.6-any)GENEAcore_1.2.0.zip(r-4.5-any)
GENEAcore_1.2.0.tgz(r-4.6-any)GENEAcore_1.2.0.tgz(r-4.5-any)
GENEAcore_1.2.0.tar.gz(r-4.7-any)GENEAcore_1.2.0.tar.gz(r-4.6-any)
GENEAcore_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GENEAcore/json (API)

# Install 'GENEAcore' in R:
install.packages('GENEAcore', repos = c('https://ai-jyc.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.34 score 11 scripts 317 downloads 51 exports 6 dependencies

Last updated from:944bda7b35. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK142
source / vignettesOK170
linux-releaseOK174
macos-releaseOK209
macos-oldrelOK216
windows-develOK124
windows-releaseOK142
windows-oldrelOK147
wasm-releaseOK104

Exports:aggregate_epochsaggregate_eventsaggregateEpochsaggregateEventsaggregatePeriodsapply_AGSAapply_allapply_calibrationapply_degreesapply_ENMOapply_radiansapply_updownbinfile_summarybouts_decision_treecalc_autocalparamscheck_MPIcreate_coel_atoms_jsoncreate_event_mappingcreate_MPIcreateEventMappingcx_percentiledetect_nonmovementdetect_transitionsexpected_last_timestampfind_rest_intervalsfolder_measuresfx_countgeneaboutgeneacoregeneacore_part1geneacore_part2geneacore_part3geneacore_part4get_cut_timesget_eventsget_UniqueBinFileIdentifierget_UniqueBinFileIdentifier.dirget_UniqueBinFileIdentifier.filepathget_UniqueBinFileIdentifier.vectoridentifier_mappingMPI_summarymx_lx_windownonwear_rest_coverageremove_short_transitionssample_binfilesingle_file_measuresstep_counterstepCountervalid_day_nonwearweighted_meanweighted_sum

Dependencies:changepointjsonlitelatticeMASSsignalzoo

GENEAcore
Overview | Introduction and Installation | i. Introduction | ii. Install R and RStudio | iii. Install and Load Package | Using GENEAcore | i. Folder preparation | ii. geneacore() wrapper function | iii. Expected outputs | iv. Bin file summary | v. MPI summary | vi. Other ways to use geneacore | Individual access to GENEAcore functions | i. Sampling your files | ii. Creating calibration values from your data | iii. Applying calibration values to your data | iv. Detecting transitions in your data for event aggregation | v. Applying calculations to raw data to obtain additional measures | vi. Get events indices from transitions | vii. Aggregating your raw data into epochs/events | GENEAbout | i. geneabout() wrapper function | ii. Expected outputs | Individual access to GENEAbout functions | i. Rest intervals | ii. Nonwear and rest coverage | iii. Decision tree | COEL Behavioural Atoms 2.0 | Appendix | i. GENEAcore functions flowchart | ii. Sample code to loop functions for a folder of files | iii. Sample code to aggregate events by day | Citation

Last update: 2026-04-02
Started: 2025-04-01

Breaking Changes
Overview | Function Name Changes | Parameter Name Changes | MPI Name Changes

Last update: 2025-11-21
Started: 2025-11-21

Readme and manuals

Help Manual

Help pageTopics
Aggregate EpochsaggregateEpochs aggregate_epochs
Aggregate EventsaggregateEvents aggregatePeriods aggregate_events createEventMapping
Apply Absolute Gravity-Subtracted Acceleration (AGSA)apply_AGSA
Apply Calibrationapply_calibration
Apply Rotation (Degrees)apply_degrees
Apply Euclidean Norm Minus One (ENMO)apply_ENMO
Apply Rotation (radians)apply_radians
Apply Elevation (UpDown)apply_updown
Bin File Summarybinfile_summary
Calculate Auto-calibration Parameterscalc_autocalparams
Print out a summary of MPI file(s)check_MPI
Create COEL Behavioural Atoms JSONcreate_coel_atoms_json
Create Measurement Period Informationcreate_MPI
Detect Non-movementdetect_nonmovement
Detect Transitionsdetect_transitions
Daily Measures for Data Folderfolder_measures
GENEAboutgeneabout
GENEAcore Main Wrappergeneacore
GENEAcore Part 1geneacore_part1
GENEAcore Part 2geneacore_part2
GENEAcore Part 3geneacore_part3
GENEAcore Part 4geneacore_part4
Generate Unique Bin File Identifierget_UniqueBinFileIdentifier
MPI SummaryMPI_summary
Sample Bin Filesample_binfile
Step CounterstepCounter step_counter